Ryan McKechnie, 31, was found dead at the property in James Street, Whins of Milton, near Bannockburn, at around 10.30am on Tuesday.
Officers went to his home after concerns that Mr McKechnie had not been seen for around three days.
His body was found inside and an investigation launched.
A 37-year-old man has been arrested and charged with murder, Police Scotland said.
He is expected to appear at Stirling Sheriff Court tomorrow.